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Karla Miller

Details

Position: Professor of Biomedical Engineering
Department: Centre for Functional MRI of the Brain
Institution: University of Oxford
Address: Centre for Functional MRI of the Brain, John Radcliffe Hospital, Headington, Oxford OX3 9DU
Phone: 01865 222551
Home page: http://www.fmrib.ox.ac.uk/~karla
E-mail: karla at fmrib.ox.ac.uk

Publications

Please note that the following is an automatically retrieved selection of papers relating to diffusion MRI, and is not a complete list of publications by this author.

• McKavanagh R, Torso M, Jenkinson M, Kolasinski J, Stagg CJ, Esiri MM, McNab JA, Johansen-Berg H, Miller KL, Chance SA (2019). Relating diffusion tensor imaging measurements to microstructural quantities in the cerebral cortex in multiple sclerosis. Hum Brain Mapp 40(15):4417-4431. [PubMed]
• Howard AF, Mollink J, Kleinnijenhuis M, Pallebage-Gamarallage M, Bastiani M, Cottaar M, Miller KL, Jbabdi S (2019). Joint modelling of diffusion MRI and microscopy. Neuroimage 201:116014. [PubMed]
• Dai E, Wu Y, Wu W, Guo R, Liu S, Miller KL, Zhang Z, Guo H (2019). A 3D k-space Fourier encoding and reconstruction framework for simultaneous multi-slab acquisition. Magn Reson Med 82(3):1012-1024. [PubMed]
• Mollink J, Hiemstra M, Miller KL, Huszar IN, Jenkinson M, Raaphorst J, Wiesmann M, Ansorge O, Pallebage-Gamarallage M, van Cappellen van Walsum AM (2019). White matter changes in the perforant path area in patients with amyotrophic lateral sclerosis. Neuropathol Appl Neurobiol 45(6):570-585. [PubMed]
• Wu W, Koopmans PJ, Andersson JLR, Miller KL (2019). Diffusion Acceleration with Gaussian process Estimated Reconstruction (DAGER). Magn Reson Med 82(1):107-125. [PubMed]
• Roebroeck A, Miller KL, Aggarwal M (2019). Ex vivo diffusion MRI of the human brain: Technical challenges and recent advances. NMR Biomed 32(4):e3941. [PubMed]
• Jones DK, Alexander DC, Bowtell R, Cercignani M, Dell'Acqua F, McHugh DJ, Miller KL, Palombo M, Parker GJM, Rudrapatna US, Tax CMW (2018). Microstructural imaging of the human brain with a 'super-scanner': 10 key advantages of ultra-strong gradients for diffusion MRI. Neuroimage 182:8-38. [PubMed]
• Thompson SA, Miller KL (2018). Disruptive trends in higher education: Leadership skills for successful leaders. J Prof Nurs 34(2):92-96. [PubMed]
• Alfaro-Almagro F, Jenkinson M, Bangerter NK, Andersson JLR, Griffanti L, Douaud G, Sotiropoulos SN, Jbabdi S, Hernandez-Fernandez M, Vallee E, Vidaurre D, Webster M, McCarthy P, Rorden C, Daducci A, Alexander DC, Zhang H, Dragonu I, Matthews PM, Miller KL, Smith SM (2018). Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank. Neuroimage 166:400-424. [PubMed]
• Mollink J, Kleinnijenhuis M, Cappellen van Walsum AV, Sotiropoulos SN, Cottaar M, Mirfin C, Heinrich MP, Jenkinson M, Pallebage-Gamarallage M, Ansorge O, Jbabdi S, Miller KL (2017). Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging. Neuroimage 157:561-574. [PubMed]
• Cardenas AM, Sarlls JE, Kwan JY, Bageac D, Gala ZS, Danielian LE, Ray-Chaudhury A, Wang HW, Miller KL, Foxley S, Jbabdi S, Welsh RC, Floeter MK (2017). Pathology of callosal damage in ALS: An ex-vivo, 7 T diffusion tensor MRI study. Neuroimage Clin 15:200-208. [PubMed]
• Kleinnijenhuis M, Mollink J, Lam WW, Kinchesh P, Khrapitchev AA, Smart SC, Jbabdi S, Miller KL (2018). Choice of reference measurements affects quantification of long diffusion time behaviour using stimulated echoes. Magn Reson Med 79(2):952-959. [PubMed]
• Xu T, Foxley S, Kleinnijenhuis M, Chen WC, Miller KL (2018). The effect of realistic geometries on the susceptibility-weighted MR signal in white matter. Magn Reson Med 79(1):489-500. [PubMed]
• Wu W, Miller KL (2017). Image formation in diffusion MRI: A review of recent technical developments. J Magn Reson Imaging 46(3):646-662. [PubMed]
• Miller KL, Alfaro-Almagro F, Bangerter NK, Thomas DL, Yacoub E, Xu J, Bartsch AJ, Jbabdi S, Sotiropoulos SN, Andersson JL, Griffanti L, Douaud G, Okell TW, Weale P, Dragonu I, Garratt S, Hudson S, Collins R, Jenkinson M, Matthews PM, Smith SM (2016). Multimodal population brain imaging in the UK Biobank prospective epidemiological study. Nat Neurosci 19(11):1523-1536. [PubMed]
• Wu W, Poser BA, Douaud G, Frost R, In MH, Speck O, Koopmans PJ, Miller KL (2016). High-resolution diffusion MRI at 7T using a three-dimensional multi-slab acquisition. Neuroimage 143:1-14. [PubMed]
• Mars RB, Foxley S, Verhagen L, Jbabdi S, Sallet J, Noonan MP, Neubert FX, Andersson JL, Croxson PL, Dunbar RI, Khrapitchev AA, Sibson NR, Miller KL, Rushworth MF (2016). The extreme capsule fiber complex in humans and macaque monkeys: a comparative diffusion MRI tractography study. Brain Struct Funct 221(8):4059-4071. [PubMed]
• Wu W, Koopmans PJ, Frost R, Miller KL (2016). Reducing slab boundary artifacts in three-dimensional multislab diffusion MRI using nonlinear inversion for slab profile encoding (NPEN). Magn Reson Med 76(4):1183-95. [PubMed]
• Mollink J, van Baarsen KM, Dederen PJ, Foxley S, Miller KL, Jbabdi S, Slump CH, Grotenhuis JA, Kleinnijenhuis M, van Cappellen van Walsum AM (2016). Dentatorubrothalamic tract localization with postmortem MR diffusion tractography compared to histological 3D reconstruction. Brain Struct Funct 221(7):3487-501. [PubMed]
• Berns GS, Cook PF, Foxley S, Jbabdi S, Miller KL, Marino L (2015). Diffusion tensor imaging of dolphin brains reveals direct auditory pathway to temporal lobe. Proc Biol Sci 282(1811). [PubMed]
• Miller KL, Lanthier M (2015). Regulatory watch: Innovation in biologic new molecular entities: 1986-2014. Nat Rev Drug Discov 14(2):83. [PubMed]
• Mars RB, Neubert FX, Verhagen L, Sallet J, Miller KL, Dunbar RI, Barton RA (2014). Primate comparative neuroscience using magnetic resonance imaging: promises and challenges. Front Neurosci 8:298. [PubMed]
• Frost R, Jezzard P, Douaud G, Clare S, Porter DA, Miller KL (2015). Scan time reduction for readout-segmented EPI using simultaneous multislice acceleration: Diffusion-weighted imaging at 3 and 7 Tesla. Magn Reson Med 74(1):136-149. [PubMed]
• Lam WW, Jbabdi S, Miller KL (2015). A model for extra-axonal diffusion spectra with frequency-dependent restriction. Magn Reson Med 73(6):2306-20. [PubMed]
• Frost R, Miller KL, Tijssen RH, Porter DA, Jezzard P (2014). 3D multi-slab diffusion-weighted readout-segmented EPI with real-time cardiac-reordered K-space acquisition. Magn Reson Med 72(6):1565-79. [PubMed]
• Sampaio-Baptista C, Khrapitchev AA, Foxley S, Schlagheck T, Scholz J, Jbabdi S, DeLuca GC, Miller KL, Taylor A, Thomas N, Kleim J, Sibson NR, Bannerman D, Johansen-Berg H (2013). Motor skill learning induces changes in white matter microstructure and myelination. J Neurosci 33(50):19499-503. [PubMed]
• Lanthier M, Miller KL, Nardinelli C, Woodcock J (2013). An improved approach to measuring drug innovation finds steady rates of first-in-class pharmaceuticals, 1987-2011. Health Aff (Millwood) 32(8):1433-9. [PubMed]
• Ugurbil K, Xu J, Auerbach EJ, Moeller S, Vu AT, Duarte-Carvajalino JM, Lenglet C, Wu X, Schmitter S, Van de Moortele PF, Strupp J, Sapiro G, De Martino F, Wang D, Harel N, Garwood M, Chen L, Feinberg DA, Smith SM, Miller KL, Sotiropoulos SN, Jbabdi S, Andersson JL, Behrens TE, Glasser MF, Van Essen DC, Yacoub E (2013). Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. Neuroimage 80:80-104. [PubMed]
• Smith SM, Beckmann CF, Andersson J, Auerbach EJ, Bijsterbosch J, Douaud G, Duff E, Feinberg DA, Griffanti L, Harms MP, Kelly M, Laumann T, Miller KL, Moeller S, Petersen S, Power J, Salimi-Khorshidi G, Snyder AZ, Vu AT, Woolrich MW, Xu J, Yacoub E, Ugurbil K, Van Essen DC, Glasser MF (2013). Resting-state fMRI in the Human Connectome Project. Neuroimage 80:144-68. [PubMed]
• Kolasinski J, Stagg CJ, Chance SA, Deluca GC, Esiri MM, Chang EH, Palace JA, McNab JA, Jenkinson M, Miller KL, Johansen-Berg H (2012). A combined post-mortem magnetic resonance imaging and quantitative histological study of multiple sclerosis pathology. Brain 135(Pt 10):2938-51. [PubMed]
• Frost R, Porter DA, Miller KL, Jezzard P (2012). Implementation and assessment of diffusion-weighted partial Fourier readout-segmented echo-planar imaging. Magn Reson Med 68(2):441-51. [PubMed]
• Miller KL, McNab JA, Jbabdi S, Douaud G (2012). Diffusion tractography of post-mortem human brains: optimization and comparison of spin echo and steady-state free precession techniques. Neuroimage 59(3):2284-97. [PubMed]
• Miller KL, Stagg CJ, Douaud G, Jbabdi S, Smith SM, Behrens TEJ, Jenkinson M, Chance SA, Esiri MM, Voets NL, Jenkinson N, Aziz TZ, Turner MR, Johansen-Berg H, McNab JA (2011). Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. Neuroimage 57(1):167-181. [PubMed]
• Mars RB, Jbabdi S, Sallet J, O'Reilly JX, Croxson PL, Olivier E, Noonan MP, Bergmann C, Mitchell AS, Baxter MG, Behrens TE, Johansen-Berg H, Tomassini V, Miller KL, Rushworth MF (2011). Diffusion-weighted imaging tractography-based parcellation of the human parietal cortex and comparison with human and macaque resting-state functional connectivity. J Neurosci 31(11):4087-100. [PubMed]
• Feinberg DA, Moeller S, Smith SM, Auerbach E, Ramanna S, Gunther M, Glasser MF, Miller KL, Ugurbil K, Yacoub E (2010). Multiplexed echo planar imaging for sub-second whole brain FMRI and fast diffusion imaging. PLoS One 5(12):e15710. [PubMed]
• McNab JA, Miller KL (2010). Steady-state diffusion-weighted imaging: theory, acquisition and analysis. NMR Biomed 23(7):781-93. [PubMed]
• Menke RA, Jbabdi S, Miller KL, Matthews PM, Zarei M (2010). Connectivity-based segmentation of the substantia nigra in human and its implications in Parkinson's disease. Neuroimage 52(4):1175-80. [PubMed]
• Gallichan D, Andersson JL, Jenkinson M, Robson MD, Miller KL (2010). Reducing distortions in diffusion-weighted echo planar imaging with a dual-echo blip-reversed sequence. Magn Reson Med 64(2):382-90. [PubMed]
• Miller KL, Smith SM, Jezzard P (2010). Asymmetries of the balanced SSFP profile. Part II: white matter. Magn Reson Med 63(2):396-406. [PubMed]
• McNab JA, Gallichan D, Miller KL (2010). 3D steady-state diffusion-weighted imaging with trajectory using radially batched internal navigator echoes (TURBINE). Magn Reson Med 63(1):235-42. [PubMed]
• Gallichan D, Scholz J, Bartsch A, Behrens TE, Robson MD, Miller KL (2010). Addressing a systematic vibration artifact in diffusion-weighted MRI. Hum Brain Mapp 31(2):193-202. [PubMed]
• Menke RA, Scholz J, Miller KL, Deoni S, Jbabdi S, Matthews PM, Zarei M (2009). MRI characteristics of the substantia nigra in Parkinson's disease: a combined quantitative T1 and DTI study. Neuroimage 47(2):435-41. [PubMed]
• McNab JA, Jbabdi S, Deoni SC, Douaud G, Behrens TE, Miller KL (2009). High resolution diffusion-weighted imaging in fixed human brain using diffusion-weighted steady state free precession. Neuroimage 46(3):775-85. [PubMed]
• McNab JA, Voets NL, Jenkinson N, Squier W, Miller KL, Goodwin GM, Aziz TZ (2009). Reduced limbic connections may contraindicate subgenual cingulate deep brain stimulation for intractable depression. J Neurosurg 111(4):780-4. [PubMed]
• Aravamuthan BR, McNab JA, Miller KL, Rushworth M, Jenkinson N, Stein JF, Aziz TZ (2009). Cortical and subcortical connections within the pedunculopontine nucleus of the primate Macaca mulatta determined using probabilistic diffusion tractography. J Clin Neurosci 16(3):413-20. [PubMed]
• Miller KL, Jezzard P (2008). Modeling SSFP functional MRI contrast in the brain. Magn Reson Med 60(3):661-73. [PubMed]
• McNab JA, Miller KL (2008). Sensitivity of diffusion weighted steady state free precession to anisotropic diffusion. Magn Reson Med 60(2):405-13. [PubMed]
• Miller KL, Bulte DP, Devlin H, Robson MD, Wise RG, Woolrich MW, Jezzard P, Behrens TE (2007). Evidence for a vascular contribution to diffusion FMRI at high b value. Proc Natl Acad Sci U S A 104(52):20967-72. [PubMed]
• Smith SM, Johansen-Berg H, Jenkinson M, Rueckert D, Nichols TE, Miller KL, Robson MD, Jones DK, Klein JC, Bartsch AJ, Behrens TE (2007). Acquisition and voxelwise analysis of multi-subject diffusion data with tract-based spatial statistics. Nat Protoc 2(3):499-503. [PubMed]
• Miller KL, Hargreaves BA, Gold GE, Pauly JM (2004). Steady-state diffusion-weighted imaging of in vivo knee cartilage. Magn Reson Med 51(2):394-8. [PubMed]
• Miller KL, Pauly JM (2003). Nonlinear phase correction for navigated diffusion imaging. Magn Reson Med 50(2):343-53. [PubMed]